TSS: Rfhg 115361.1: Difference between revisions

Latest revision as of 19:19, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_115361.1
Species:	human
Chr:	chr9

Start:	69820661
End:	69820695
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4193173,EH38E2695408)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000662063.1 ENST00000453410.1 ENST00000652595.1 ENST00000526458.1 BC039385
Distance:	0
GeneID:	494558
HGNC/MGI_ID:	HGNC:48713
UniProt_ID:

Gene_name:	C9orf135-DT
Gene_symbol:	CFAP95-DT
Gene_synonyms:
Gene_source:	HGNC:48713

TATA-Box annotation

Distance to TSS:	61
Nearest PromoterID:	NR_038833
Entrez ID:	494558
Nearest Unigene:	Hs.130722
Nearest Refseq:	NR_038833
Nearest Ensembl:	ENSG00000225626
Gene Name:	C9orf135-DT
Gene Alias:	C9orf135-AS1
Gene Description:	C9orf135 divergent transcript
Gene Type:	ncRNA
CpG%:	0.029412
GC%:	0.514286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:48713
+|methods=CAGE
 |nearest_ensembl=ENSG00000225626
 |nearest_promoter_id=NR_038833
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=69820661