TSS: Rfhg 115595.1: Difference between revisions

Revision as of 19:23, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_115595.1
Species:	human
Chr:	chr9

Start:	72521692
End:	72521692
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D4195388,EH38E2696859)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000643676.1:-84 ENST00000297784.10:-84
GeneID:	117531
HGNC/MGI_ID:	HGNC:16513
UniProt_ID:	Q8TDI8
Nearer transcript ids and distances:

Gene_name:	TMC1
Gene_symbol:	TMC1
Gene_synonyms:
Gene_source:	HGNC:16513

TATA-Box annotation

Distance to TSS:	-109
Nearest PromoterID:	NM_138691
Entrez ID:	117531
Nearest Unigene:	Hs.670211
Nearest Refseq:	NM_138691
Nearest Ensembl:	ENSG00000165091
Gene Name:	TMC1
Gene Alias:	DFNA36\|DFNB11\|DFNB7
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:16513
+|methods=TSS_database
 |nearest_ensembl=ENSG00000165091
 |nearest_promoter_id=NM_138691
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=72521692