TSS: Rfhg 115636.1: Difference between revisions
From referenceTSS
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|methods=CAGE{{!}}C1CAGE{{!}}NETCAGE{{!}}ReCappable-seq | |||
|nearest_ensembl=ENSG00000165092 | |nearest_ensembl=ENSG00000165092 | ||
|nearest_promoter_id=NM_000689 | |nearest_promoter_id=NM_000689 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start=72930882 | |start=72930882 | ||
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|tata_box= | |tata_box= | ||
|transcript_name= | |transcript_name= | ||
|tss_cluster_detected=5 | |||
|tss_id=rfhg_115636.1 | |tss_id=rfhg_115636.1 | ||
|tss_id_v3=hg_100983.1 | |tss_id_v3=hg_100983.1 |
Revision as of 19:23, 6 December 2023
Basic information about the TSS
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Source datasets | FANTOM5|PRJDB5282|PRJNA4843412|DRA013844|PRJNA548673 | |||||||||||||||
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Protocol | CAGE|C1CAGE|NETCAGE|ReCappable-seq | |||||||||||||||
TSS cluster detected* | 5 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | dELS,CTCF-bound (EH38D4195712,EH38E2697093) |
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Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 22102 |
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Nearest PromoterID: | NM_000689 |
Entrez ID: | 216 |
Nearest Unigene: | Hs.76392 |
Nearest Refseq: | NM_000689 |
Nearest Ensembl: | ENSG00000165092 |
Gene Name: | ALDH1A1 |
Gene Alias: | ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 |
Gene Type: | protein-coding |
CpG%: | 0.050360 |
GC%: | 0.507143 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |