TSS: Rfhg 116062.1: Difference between revisions

Revision as of 19:30, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_116062.1
Species:	human
Chr:	chr9

Start:	83708214
End:	83708249
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4203786,EH38E2702132)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF384925:-4 MA620502:-4
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC105376114
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-100
Nearest PromoterID:	NR_135840
Entrez ID:	105376114
Nearest Unigene:	Hs.9589
Nearest Refseq:	NR_135839
Nearest Ensembl:	ENSG00000254473
Gene Name:	LOC105376114
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.171429
GC%:	0.583333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000254473
 |nearest_promoter_id=NR_135840
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=83708214