TSS: Rfhg 116390.1: Difference between revisions

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|gene_type=ncRNA
|gene_type=ncRNA
|hgnc_mgi_id=HGNC:39052
|hgnc_mgi_id=HGNC:39052
|methods=CAGE
|nearest_ensembl=
|nearest_ensembl=
|nearest_promoter_id=NR_135138
|nearest_promoter_id=NR_135138
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|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=88065551
|start=88065551

Revision as of 19:36, 6 December 2023

Basic information about the TSS

TSS ID:rfhg_116390.1
Species:human
Chr:chr9
Start:88065551
End:88065565
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AK124340:0
GeneID:100131068
HGNC/MGI_ID:HGNC:39052
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:LOC102724156
    Gene_symbol:ERVI-1
    Gene_synonyms:
    Gene_source:HGNC:39052



    TATA-Box annotation

    Distance to TSS:12342
    Nearest PromoterID:NR_135138
    Entrez ID:102724156
    Nearest Unigene:Hs.633031
    Nearest Refseq:NR_135137
    Nearest Ensembl:
    Gene Name:LOC102724156
    Gene Alias:-
    Gene Type:ncRNA
    CpG%:0.071429
    GC%:0.600000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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