TSS: Rfhg 116454.1: Difference between revisions

Revision as of 19:37, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_116454.1
TSS ID(Version3):	hg_101286.1
Species:	human
Chr:	chr9

Start:	89180337
End:	89180406
Strand:	-

Source datasets

FANTOM5|PRJNA548673

Protocol

CAGE|ReCappable-seq

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4208388,EH38E2705200)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SHC3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1553
Nearest PromoterID:	NM_016848
Entrez ID:	53358
Nearest Unigene:	Hs.292737
Nearest Refseq:	NM_016848
Nearest Ensembl:	ENSG00000148082
Gene Name:	SHC3
Gene Alias:	N-Shc\|NSHC\|RAI\|SHCC
Gene Type:	protein-coding
CpG%:	0.043478
GC%:	0.471429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000148082
 |nearest_promoter_id=NM_016848
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA548673
 |species=human
 |start=89180337
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=
+|tss_cluster_detected=3
 |tss_id=rfhg_116454.1
 |tss_id_v3=hg_101286.1