TSS: Rfhg 117065.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:27858 | |hgnc_mgi_id=HGNC:27858 | ||
|methods=CAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2 | |||
|nearest_ensembl=ENSG00000182150 | |nearest_ensembl=ENSG00000182150 | ||
|nearest_promoter_id=NM_020207 | |nearest_promoter_id=NM_020207 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA401781{{!}}PRJNA548673{{!}}DRA013844{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start=95875454 | |start=95875454 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENST00000433656.2 ENST00000671508.1 AF170307 | |transcript_name=ENST00000433656.2 ENST00000671508.1 AF170307 | ||
|tss_cluster_detected=8 | |||
|tss_id=rfhg_117065.1 | |tss_id=rfhg_117065.1 | ||
|tss_id_v3=hg_101582.1;hg_101583.1;hg_101584.1 | |tss_id_v3=hg_101582.1;hg_101583.1;hg_101584.1 |
Latest revision as of 19:49, 6 December 2023
Basic information about the TSS
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Source datasets | FANTOM5|PRJNA401781|PRJNA548673|DRA013844|PRJNA615891 | |||||||||||||||
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Protocol | CAGE|oligo_capping|ReCappable-seq|SLIC_CAGE|TIF-seq2 | |||||||||||||||
TSS cluster detected* | 8 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D4214909,EH38E2710001) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -192 |
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Nearest PromoterID: | NM_020207 |
Entrez ID: | 375748 |
Nearest Unigene: | Hs.432364 |
Nearest Refseq: | NM_020207 |
Nearest Ensembl: | ENSG00000182150 |
Gene Name: | ERCC6L2 |
Gene Alias: | BMFS2|C9orf102|RAD26L|SR278 |
Gene Description: | ERCC excision repair 6 like 2 |
Gene Type: | protein-coding |
CpG%: | 0.100000 |
GC%: | 0.626374 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.