TSS: Rfhg 117365.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:23159 | |hgnc_mgi_id=HGNC:23159 | ||
|methods=CAGE{{!}}SLIC_CAGE{{!}}STRIPE-seq{{!}}RAMPAGE{{!}}ReCappable-seq{{!}}NETCAGE | |||
|nearest_ensembl=ENSG00000119523 | |nearest_ensembl=ENSG00000119523 | ||
|nearest_promoter_id=NM_033087 | |nearest_promoter_id=NM_033087 | ||
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|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA597322{{!}}PRJNA548673{{!}}PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start=99221903 | |start=99221903 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENST00000476832.2 ENST00000238477.5 AK074988 AB161356 AK075172 BC017876 AK027417 AK074704 | |transcript_name=ENST00000476832.2 ENST00000238477.5 AK074988 AB161356 AK075172 BC017876 AK027417 AK074704 | ||
|tss_cluster_detected=9 | |||
|tss_id=rfhg_117365.1 | |tss_id=rfhg_117365.1 | ||
|tss_id_v3=hg_101706.1;hg_101705.1 | |tss_id_v3=hg_101706.1;hg_101705.1 | ||
Latest revision as of 19:54, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|PRJNA615891|PRJNA401781|PRJNA597322|PRJNA548673 |PRJNA4843412|DRA013844 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|SLIC_CAGE|STRIPE-seq|RAMPAGE|ReCappable-seq|NETCAGE | |||||||||||||||
| TSS cluster detected* | 9 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4217958,EH38E2712257) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_033087 |
| Entrez ID: | 85365 |
| Nearest Unigene: | Hs.40919 |
| Nearest Refseq: | NM_033087 |
| Nearest Ensembl: | ENSG00000119523 |
| Gene Name: | ALG2 |
| Gene Alias: | CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2 |
| Gene Description: | ALG2 alpha-1,3/1,6-mannosyltransferase |
| Gene Type: | protein-coding |
| CpG%: | 0.101124 |
| GC%: | 0.722222 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.