TSS: Hg 102520.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=-80374 |entrez_id=4010 |gc_percent=0.61194 |gene_alias=LMX1.2|NPS1 |gene_description=LIM homeobox transcription factor 1 beta |...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|NPS1= | |||
|chr=chr9 | |||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance= | |||
|distance_to_tss=-80374 | |distance_to_tss=-80374 | ||
|end=126534074 | |||
|entrez_id=4010 | |entrez_id=4010 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_002316 | |nearest_refseq=NM_002316 | ||
|nearest_unigene=Hs.129133 | |nearest_unigene=Hs.129133 | ||
|num_trans=0 | |||
|species=human | |||
|start=126534064 | |||
|strand=- | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102520.1 | |tss_id=hg_102520.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:30, 8 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -80374 |
|---|---|
| Nearest PromoterID: | NM_001174147 |
| Entrez ID: | 4010 |
| Nearest Unigene: | Hs.129133 |
| Nearest Refseq: | NM_002316 |
| Nearest Ensembl: | ENSG00000136944 |
| Gene Name: | LMX1B |
| Gene Alias: | LMX1.2 |
| Gene Description: | LIM homeobox transcription factor 1 beta |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |