TSS: Rfhg 11821.1: Difference between revisions

Revision as of 20:10, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_11821.1
TSS ID(Version3):	hg_223811.1
Species:	human
Chr:	chr1

Start:	146387439
End:	146387534
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

10

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2219472,EH38E1382394)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	MN308789:-227
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	RNU1-2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	10679
Nearest PromoterID:	NR_004427
Entrez ID:	26870
Nearest Unigene:
Nearest Refseq:	NR_004427
Nearest Ensembl:	ENSG00000207005
Gene Name:	RNU1-2
Gene Alias:	RNU1C1\|RNU1C2\|U1C1\|U1C21
Gene Type:	snRNA
CpG%:	0.010526
GC%:	0.375000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):	47(CCTTTTAAACCC,+,0.00)

@@ Line 21: / Line 21: @@
 |gene_type=snRNA
 |hgnc_mgi_id=
+|methods=CAGE{{!}}NETCAGE{{!}}SLIC_CAGE{{!}}RAMPAGE{{!}}ReCappable-seq{{!}}oligo_capping{{!}}TIF-seq2
 |nearest_ensembl=ENSG00000207005
 |nearest_promoter_id=NR_004427
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}PRJNA615891{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA548673
 |species=human
 |start=146387439