TSS: Rfhg 118253.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:24994 | |hgnc_mgi_id=HGNC:24994 | ||
|methods=C1CAGE{{!}}NETCAGE{{!}}CAGE{{!}}RAMPAGE{{!}}STRIPE-seq{{!}}SLIC_CAGE{{!}}ReCappable-seq{{!}}TIF-seq2{{!}}oligo_capping | |||
|nearest_ensembl=ENSG00000148153 | |nearest_ensembl=ENSG00000148153 | ||
|nearest_promoter_id=NM_001329586 | |nearest_promoter_id=NM_001329586 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA597322{{!}}PRJNA615891{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start=112718024 | |start=112718024 | ||
| Line 32: | Line 34: | ||
|tata_box=104(CCCTTTAAGAGC,+,0.00),104(CCCTTTAAGAGC,-,0.00),105(CCTTTAAGAGCA,+,0.00) | |tata_box=104(CCCTTTAAGAGC,+,0.00),104(CCCTTTAAGAGC,-,0.00),105(CCTTTAAGAGCA,+,0.00) | ||
|transcript_name=ENST00000374242.9 ENST00000497712.6 ENST00000481146.6 ENST00000374234.1 ENST00000476599.2 BC014881 AK000637 BC065210 AF161409 AF161411 AK310007 | |transcript_name=ENST00000374242.9 ENST00000497712.6 ENST00000481146.6 ENST00000374234.1 ENST00000476599.2 BC014881 AK000637 BC065210 AF161409 AF161411 AK310007 | ||
|tss_cluster_detected= | |tss_cluster_detected=11 | ||
|tss_id=rfhg_118253.1 | |tss_id=rfhg_118253.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q5VWJ6 Q9NRY2 | |uniprot_id=Q5VWJ6 Q9NRY2 | ||
}} | }} | ||
Latest revision as of 20:11, 6 December 2023
Basic information about the TSS
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| Source datasets | PRJDB5282|PRJNA4843412|DRA013844|PRJNA401781|PRJNA597322 |PRJNA615891|PRJNA548673 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | C1CAGE|NETCAGE|CAGE|RAMPAGE|STRIPE-seq|SLIC_CAGE |ReCappable-seq|TIF-seq2|oligo_capping | |||||||||||||
| TSS cluster detected* | 11 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4228014,EH38E2718956) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_001329586 |
| Entrez ID: | 58493 |
| Nearest Unigene: | Hs.658575 |
| Nearest Refseq: | NM_021218 |
| Nearest Ensembl: | ENSG00000148153 |
| Gene Name: | INIP |
| Gene Alias: | C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 |
| Gene Description: | INTS3 and NABP interacting protein |
| Gene Type: | protein-coding |
| CpG%: | 0.099174 |
| GC%: | 0.647541 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): | 104(CCCTTTAAGAGC,+,0.00),104(CCCTTTAAGAGC,-,0.00),105(CCTTTAAGAGCA,+,0.00) |
TSS expression
Expression data not found.