TSS: Rfhg 118951.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:3383 | |hgnc_mgi_id=HGNC:3383 | ||
|methods=CAGE{{!}}C1CAGE{{!}}NETCAGE{{!}}TIF-seq2{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}RAMPAGE{{!}}oligo_capping | |||
|nearest_ensembl=ENSG00000148175 | |nearest_ensembl=ENSG00000148175 | ||
|nearest_promoter_id=NM_198194 | |nearest_promoter_id=NM_198194 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJNA401781 | |||
|species=human | |species=human | ||
|start=121370196 | |start=121370196 | ||
| Line 32: | Line 34: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000286713.7 ENST00000347359.3 M81635 BC010703 AK304518 AK304449 AK307999 AK302977 | |transcript_name=ENST00000286713.7 ENST00000347359.3 M81635 BC010703 AK304518 AK304449 AK307999 AK302977 | ||
|tss_cluster_detected=11 | |||
|tss_id=rfhg_118951.1 | |tss_id=rfhg_118951.1 | ||
|tss_id_v3=hg_102352.1;hg_102353.1 | |tss_id_v3=hg_102352.1;hg_102353.1 | ||
Latest revision as of 20:24, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|PRJDB5282|PRJNA4843412|DRA013844|PRJNA615891 |PRJNA548673|PRJNA401781 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|C1CAGE|NETCAGE|TIF-seq2|ReCappable-seq|SLIC_CAGE |RAMPAGE|oligo_capping | |||||||||||||||
| TSS cluster detected* | 11 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 9 |
|---|---|
| Nearest PromoterID: | NM_198194 |
| Entrez ID: | 2040 |
| Nearest Unigene: | Hs.253903 |
| Nearest Refseq: | NM_004099 |
| Nearest Ensembl: | ENSG00000148175 |
| Gene Name: | STOM |
| Gene Alias: | BND7|EPB7|EPB72 |
| Gene Description: | stomatin |
| Gene Type: | protein-coding |
| CpG%: | 0.088889 |
| GC%: | 0.670330 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.