TSS: Rfhg 119623.1: Difference between revisions

Latest revision as of 20:36, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_119623.1
Species:	human
Chr:	chr9

Start:	127916932
End:	127916932
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	BC036705
Distance:	0
GeneID:	27090
HGNC/MGI_ID:	HGNC:17846
UniProt_ID:

Gene_name:	ST6GALNAC4
Gene_symbol:	ST6GALNAC4
Gene_synonyms:	SIAT3C ST6GALNACIV
Gene_source:	HGNC:17846

TATA-Box annotation

Distance to TSS:	94
Nearest PromoterID:	NM_175040
Entrez ID:	27090
Nearest Unigene:	Hs.3972
Nearest Refseq:	NM_014403
Nearest Ensembl:	ENSG00000136840
Gene Name:	ST6GALNAC4
Gene Alias:	IV\|SIAT3-C\|SIAT3C\|SIAT7-D\|SIAT7D\|ST6GALNACIV\|ST6GalNAc
Gene Description:	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:17846
+|methods=TSS_database
 |nearest_ensembl=ENSG00000136840
 |nearest_promoter_id=NM_175040
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=127916932