TSS: Hg 102544.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=29556 |entrez_id=64855 |gc_percent=0.552239 |gene_alias=C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 |gene_description=family with sequ...") |
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{{TSSDetail | {{TSSDetail | ||
|MEG-3= | |||
|MINERVA= | |||
|OC58= | |||
|bA356B19.6= | |||
|chr=chr9 | |||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance= | |||
|distance_to_tss=29556 | |distance_to_tss=29556 | ||
|end=127539573 | |||
|entrez_id=64855 | |entrez_id=64855 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| Line 12: | Line 19: | ||
|nearest_refseq=NM_022833 | |nearest_refseq=NM_022833 | ||
|nearest_unigene=Hs.522401 | |nearest_unigene=Hs.522401 | ||
|num_trans=0 | |||
|species=human | |||
|start=127539549 | |||
|strand=- | |||
|tata_box="-43(CCATTTTAAAGG,-,0.00)" | |tata_box="-43(CCATTTTAAAGG,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102544.1 | |tss_id=hg_102544.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:31, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 29556 |
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| Nearest PromoterID: | NM_022833 |
| Entrez ID: | 64855 |
| Nearest Unigene: | Hs.522401 |
| Nearest Refseq: | NM_022833 |
| Nearest Ensembl: | ENSG00000136830 |
| Gene Name: | FAM129B |
| Gene Alias: | C9orf88 |
| Gene Description: | family with sequence similarity 129 member B |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-43(CCATTTTAAAGG,-,0.00)" |