TSS: Rfhg 119912.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 21: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26933 | |hgnc_mgi_id=HGNC:26933 | ||
|methods=CAGE{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}NETCAGE{{!}}RAMPAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}STRIPE-seq | |||
|nearest_ensembl=ENSG00000198917 | |nearest_ensembl=ENSG00000198917 | ||
|nearest_promoter_id=NM_016390 | |nearest_promoter_id=NM_016390 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA548673{{!}}PRJNA597322 | |||
|species=human | |species=human | ||
|start=128829780 | |start=128829780 | ||
| Line 32: | Line 34: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000361256.10 AL110193 AK303563 BC010579 BC046133 BC063644 BC021273 BC056890 BC033677 BC039590 AF161459 HQ448052 CU687792 | |transcript_name=ENST00000361256.10 AL110193 AK303563 BC010579 BC046133 BC063644 BC021273 BC056890 BC033677 BC039590 AF161459 HQ448052 CU687792 | ||
|tss_cluster_detected= | |tss_cluster_detected=10 | ||
|tss_id=rfhg_119912.1 | |tss_id=rfhg_119912.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=B4E0X4 Q5T280 Q9P041 | |uniprot_id=B4E0X4 Q5T280 Q9P041 | ||
}} | }} | ||
Latest revision as of 20:42, 6 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | PRJNA401781|PRJNA615891|PRJNA4843412|DRA013844|PRJNA548673 |PRJNA597322 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|SLIC_CAGE|TIF-seq2|NETCAGE|RAMPAGE|oligo_capping |ReCappable-seq|STRIPE-seq | |||||||||||||
| TSS cluster detected* | 10 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4243170,EH38E2729880) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -6 |
|---|---|
| Nearest PromoterID: | NM_016390 |
| Entrez ID: | 51490 |
| Nearest Unigene: | Hs.224137 |
| Nearest Refseq: | NM_016390 |
| Nearest Ensembl: | ENSG00000198917 |
| Gene Name: | SPOUT1 |
| Gene Alias: | C9orf114|CENP-32|CENP32|HSPC109 |
| Gene Description: | SPOUT domain containing methyltransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.097561 |
| GC%: | 0.619048 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.