TSS: Rfhg 119995.1: Difference between revisions

Latest revision as of 20:44, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_119995.1
TSS ID(Version3):	hg_102737.1
Species:	human
Chr:	chr9

Start:	129178235
End:	129178267
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

11

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4243560,EH38E2730196)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Transcript_name:	ENST00000372491.4 BC064028
Distance:	0
GeneID:	389792
HGNC/MGI_ID:	HGNC:23679
UniProt_ID:	Q5T953

Gene_name:	IER5L
Gene_symbol:	IER5L
Gene_synonyms:	bA247A12.2
Gene_source:	HGNC:23679

TATA-Box annotation

Distance to TSS:	10
Nearest PromoterID:	NM_203434
Entrez ID:	389792
Nearest Unigene:	Hs.529857
Nearest Refseq:	NM_203434
Nearest Ensembl:	ENSG00000188483
Gene Name:	IER5L
Gene Alias:	bA247A12.2
Gene Description:	immediate early response 5 like
Gene Type:	protein-coding
CpG%:	0.093750
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:23679
+|methods=CAGE{{!}}TSS_database{{!}}C1CAGE{{!}}TIF-seq2{{!}}SLIC_CAGE{{!}}NETCAGE{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000188483
 |nearest_promoter_id=NM_203434
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}ENCODE{{!}}PRJDB5282{{!}}DRA013844{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJNA4843412{{!}}PRJNA401781
 |species=human
 |start=129178235
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000372491.4 BC064028
+|tss_cluster_detected=11
 |tss_id=rfhg_119995.1
 |tss_id_v3=hg_102737.1