TSS: Rfhg 120059.1: Difference between revisions
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:17181 | |hgnc_mgi_id=HGNC:17181 | ||
|methods=NETCAGE{{!}}CAGE{{!}}SLIC_CAGE{{!}}ReCappable-seq | |||
|nearest_ensembl=ENSG00000148331 | |nearest_ensembl=ENSG00000148331 | ||
|nearest_promoter_id=NM_177999 | |nearest_promoter_id=NM_177999 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start=129642096 | |start=129642096 | ||
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|tata_box= | |tata_box= | ||
|transcript_name=ENST00000450050.6 ENST00000277458.5 ENST00000277459.8 BC001719 AK225618 AK000555 AK023004 AK292807 AK299193 | |transcript_name=ENST00000450050.6 ENST00000277458.5 ENST00000277459.8 BC001719 AK225618 AK000555 AK023004 AK292807 AK299193 | ||
|tss_cluster_detected= | |tss_cluster_detected=6 | ||
|tss_id=rfhg_120059.1 | |tss_id=rfhg_120059.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A8K9U2 B4DRC4 F6TX30 Q9NWX5 | |uniprot_id=A8K9U2 B4DRC4 F6TX30 Q9NWX5 | ||
}} | }} | ||
Latest revision as of 20:45, 6 December 2023
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844|PRJNA401781|PRJNA548673|PRJNA615891 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE|SLIC_CAGE|ReCappable-seq | |||||||||||||
| TSS cluster detected* | 6 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_177999 |
| Entrez ID: | 140459 |
| Nearest Unigene: | Hs.125037 |
| Nearest Refseq: | NM_017873 |
| Nearest Ensembl: | ENSG00000148331 |
| Gene Name: | ASB6 |
| Gene Alias: | - |
| Gene Description: | ankyrin repeat and SOCS box containing 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.120000 |
| GC%: | 0.776316 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.