TSS: Hg 102548.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|MEG-3= | |||
|MINERVA= | |||
|OC58= | |||
|all_trans=ENST00000468379.1:0 uc064vvt.1:0 BC067366:5 ENST00000478917.1:65 uc064vvs.1:65 AB210016:95 ENST00000484348.2:-118 uc064vvu.1:-118 BC110345:-118 ENST00000373312.3:-130 uc004brh.5:-130 NM_022833:-159 AF192911:-159 | |||
|bA356B19.6= | |||
|chr=chr9 | |||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
|distance=0 | |||
|distance_to_tss=163 | |distance_to_tss=163 | ||
|end=127568958 | |||
|entrez_id=64855 | |entrez_id=64855 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
|gene_alias=C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 | |gene_alias=C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 | ||
|gene_description=family with sequence similarity 129 member B | |gene_description=family with sequence similarity 129 member B | ||
|gene_name=FAM129B | |gene_id=64855 | ||
|gene_name=family with sequence similarity 129 member B | |||
|gene_source=HGNC:25282 | |||
|gene_symbol=FAM129B | |||
|gene_synonyms=DKFZP434H0820 FLJ13518 FLJ22151 FLJ22298 MINERVA bA356B19.6 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25282 | |||
|nearest_ensembl=ENSG00000136830 | |nearest_ensembl=ENSG00000136830 | ||
|nearest_promoter_id=NM_022833 | |nearest_promoter_id=NM_022833 | ||
|nearest_refseq=NM_022833 | |nearest_refseq=NM_022833 | ||
|nearest_unigene=Hs.522401 | |nearest_unigene=Hs.522401 | ||
|num_trans=13 | |||
|species=human | |||
|start=127568949 | |||
|strand=- | |||
|transcript_name=ENST00000468379.1 uc064vvt.1 | |||
|tss_classification=yes | |||
|tss_id=hg_102548.1 | |tss_id=hg_102548.1 | ||
|tss_score=1 | |||
|uniprot_id= | |||
}} | }} | ||
Revision as of 19:31, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 163 |
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| Nearest PromoterID: | NM_022833 |
| Entrez ID: | 64855 |
| Nearest Unigene: | Hs.522401 |
| Nearest Refseq: | NM_022833 |
| Nearest Ensembl: | ENSG00000136830 |
| Gene Name: | family with sequence similarity 129 member B |
| Gene Alias: | C9orf88 |
| Gene Description: | family with sequence similarity 129 member B |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.