TSS: Rfhg 120220.1: Difference between revisions

Revision as of 20:48, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_120220.1
TSS ID(Version3):	hg_99032.1
Species:	human
Chr:	chr9

Start:	130693756
End:	130693789
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

16

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4245415,EH38E2731699)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000546165.5:0 ENST00000430138.6:0 ENST00000490641.5:0 ENST00000372352.7:0 ENST00000372358.10:0 ENST00000372351.7:0 ENST00000372350.7:0 AK296605:0 AK001916:0 AK090512:0 AK022460:0 AK303163:0
GeneID:	23404
HGNC/MGI_ID:	HGNC:17097
UniProt_ID:	A3KFL1 A3KFL2 B3KQW2 Q13868
Nearer transcript ids and distances:

Gene_name:	EXOSC2
Gene_symbol:	EXOSC2
Gene_synonyms:	RRP4 Rrp4p hRrp4p p7
Gene_source:	HGNC:17097

TATA-Box annotation

Distance to TSS:	-8
Nearest PromoterID:	NM_014285
Entrez ID:	23404
Nearest Unigene:	Hs.654643
Nearest Refseq:	NM_014285
Nearest Ensembl:	ENSG00000130713
Gene Name:	EXOSC2
Gene Alias:	RRP4\|Rrp4p\|SHRF\|hRrp4p\|p7
Gene Type:	protein-coding
CpG%:	0.090909
GC%:	0.647059
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:17097
+|methods=CAGE{{!}}TSS_database{{!}}TSS-seq{{!}}NETCAGE{{!}}C1CAGE{{!}}RAMPAGE{{!}}oligo_capping{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}ReCappable-seq{{!}}STRIPE-seq
 |nearest_ensembl=ENSG00000130713
 |nearest_promoter_id=NM_014285
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DBTSS{{!}}DRA000914{{!}}ENCODE{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282{{!}}PRJNA401781{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJNA597322
 |species=human
 |start=130693756
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000546165.5 ENST00000430138.6 ENST00000490641.5 ENST00000372352.7 ENST00000372358.10 ENST00000372351.7 ENST00000372350.7 AK296605 AK001916 AK090512 AK022460 AK303163
+|tss_cluster_detected=16
 |tss_id=rfhg_120220.1
 |tss_id_v3=hg_99032.1