TSS: Rfhg 12032.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
Line 21: Line 21:
|gene_type=ncRNA
|gene_type=ncRNA
|hgnc_mgi_id=HGNC:29050
|hgnc_mgi_id=HGNC:29050
|methods=CAGE
|nearest_ensembl=ENSG00000277147
|nearest_ensembl=ENSG00000277147
|nearest_promoter_id=NR_111952
|nearest_promoter_id=NR_111952
Line 27: Line 28:
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=DRA000914
|species=human
|species=human
|start=149607338
|start=149607338

Revision as of 20:50, 6 December 2023

Basic information about the TSS

TSS ID:rfhg_12032.1
Species:human
Chr:chr1
Start:149607338
End:149607346
Strand:+
Source datasetsDRA000914
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000610578.4:0
AB007962:0
GeneID:57234
HGNC/MGI_ID:HGNC:29050
UniProt_ID:P0C866
Nearer transcript ids and distances:
    Gene_name:LINC00869
    Gene_symbol:LINC00869
    Gene_synonyms:KIAA0493
    Gene_source:HGNC:29050



    TATA-Box annotation

    Distance to TSS:330
    Nearest PromoterID:NR_111952
    Entrez ID:57234
    Nearest Unigene:Hs.456578
    Nearest Refseq:NR_046135
    Nearest Ensembl:ENSG00000277147
    Gene Name:LINC00869
    Gene Alias:FAM91A2
    Gene Type:ncRNA
    CpG%:0.000000
    GC%:0.333333
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
    Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_12032.1&oldid=2764878"