TSS: Rfhg 120503.1: Difference between revisions
From referenceTSS
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|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:12397 | |hgnc_mgi_id=HGNC:12397 | ||
|methods=SLIC_CAGE{{!}}TIF-seq2{{!}}C1CAGE{{!}}NETCAGE{{!}}CAGE{{!}}RAMPAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}STRIPE-seq | |||
|nearest_ensembl=ENSG00000125482 | |nearest_ensembl=ENSG00000125482 | ||
|nearest_promoter_id=NM_007344 | |nearest_promoter_id=NM_007344 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA615891{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA597322 | |||
|species=human | |species=human | ||
|start=132406809 | |start=132406809 | ||
| Line 32: | Line 34: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000334270.3 ENST00000612514.4 BC127669 BC127670 BC143048 BC143049 AK302902 BC143821 BC050734 AK225119 BC062692 BC104639 | |transcript_name=ENST00000334270.3 ENST00000612514.4 BC127669 BC127670 BC143048 BC143049 AK302902 BC143821 BC050734 AK225119 BC062692 BC104639 | ||
|tss_cluster_detected= | |tss_cluster_detected=11 | ||
|tss_id=rfhg_120503.1 | |tss_id=rfhg_120503.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A0A024R8C1 A0A087WY09 B4DZG2 | |uniprot_id=A0A024R8C1 A0A087WY09 B4DZG2 | ||
}} | }} | ||
Latest revision as of 20:53, 6 December 2023
Basic information about the TSS
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| Source datasets | PRJNA615891|PRJDB5282|PRJNA4843412|DRA013844|PRJNA401781 |PRJNA548673|PRJNA597322 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | SLIC_CAGE|TIF-seq2|C1CAGE|NETCAGE|CAGE|RAMPAGE |oligo_capping|ReCappable-seq|STRIPE-seq | |||||||||||||
| TSS cluster detected* | 11 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4247409,EH38E2733191) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 9 |
|---|---|
| Nearest PromoterID: | NM_007344 |
| Entrez ID: | 7270 |
| Nearest Unigene: | Hs.54780 |
| Nearest Refseq: | NM_007344 |
| Nearest Ensembl: | ENSG00000125482 |
| Gene Name: | TTF1 |
| Gene Alias: | TTF-1|TTF-I |
| Gene Description: | transcription termination factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045455 |
| GC%: | 0.555556 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.