TSS: Rfhg 120966.1: Difference between revisions

Revision as of 21:01, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_120966.1
Species:	human
Chr:	chr9

Start:	134728742
End:	134728757
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF346487:-14 MA582064:-14
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	COL5A1-AS1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-75906
Nearest PromoterID:	NR_138049
Entrez ID:	414316
Nearest Unigene:	Hs.571561
Nearest Refseq:	NR_138049
Nearest Ensembl:	ENSG00000204011
Gene Name:	COL5A1-AS1
Gene Alias:	C9orf104\|bA54A22.4
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.750000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000204011
 |nearest_promoter_id=NR_138049
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=134728742