TSS: Rfhg 121377.1: Difference between revisions

Revision as of 21:08, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_121377.1
Species:	human
Chr:	chr9

Start:	136808563
End:	136808602
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4252841,EH38E2737182)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000414656.1:-246 AK055547:-246
GeneID:	100131193
HGNC/MGI_ID:	HGNC:44105
UniProt_ID:	Q96NE7
Nearer transcript ids and distances:

Gene_name:	CCDC183-AS1
Gene_symbol:	CCDC183-AS1
Gene_synonyms:
Gene_source:	HGNC:44105

TATA-Box annotation

Distance to TSS:	266
Nearest PromoterID:	NR_024580
Entrez ID:	100131193
Nearest Unigene:	Hs.734812
Nearest Refseq:	NR_024580
Nearest Ensembl:	ENSG00000228544
Gene Name:	CCDC183-AS1
Gene Alias:	KIAA1984-AS1
Gene Type:	ncRNA
CpG%:	0.179487
GC%:	0.775000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=HGNC:44105
+|methods=CAGE
 |nearest_ensembl=ENSG00000228544
 |nearest_promoter_id=NR_024580
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=136808563