TSS: Hg 102584.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=9515 |entrez_id=102723566 |gc_percent=0.691542 |gene_alias=- |gene_description=uncharacterized LOC102723566 |gene_name=LOC102723...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance= | |||
|distance_to_tss=9515 | |distance_to_tss=9515 | ||
|end=127825584 | |||
|entrez_id=102723566 | |entrez_id=102723566 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| Line 12: | Line 15: | ||
|nearest_refseq=NR_136302 | |nearest_refseq=NR_136302 | ||
|nearest_unigene= | |nearest_unigene= | ||
|num_trans=0 | |||
|species=human | |||
|start=127825578 | |||
|strand=- | |||
|tata_box="-34(TCCCTTATAAAG,-,0.00),-32(CCTTATAAAGCC,+,0.00)" | |tata_box="-34(TCCCTTATAAAG,-,0.00),-32(CCTTATAAAGCC,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102584.1 | |tss_id=hg_102584.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:32, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 9515 |
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| Nearest PromoterID: | NR_136302 |
| Entrez ID: | 102723566 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_136302 |
| Nearest Ensembl: | ENSG00000225032 |
| Gene Name: | LOC102723566 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC102723566 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(TCCCTTATAAAG,-,0.00),-32(CCTTATAAAGCC,+,0.00)" |