TSS: Rfhg 124942.1: Difference between revisions

Revision as of 22:13, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_124942.1
TSS ID(Version3):	hg_104760.1 hg_104759.1
Species:	human
Chr:	chr10

Start:	43436849
End:	43437123
Strand:	+

Source datasets

FANTOM5|EPD|PRJDB5282|PRJNA4843412|DRA013844

Protocol

CAGE|TSS_database|C1CAGE|NETCAGE

TSS cluster detected^*

5

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2337505,EH38E1464019)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001355449.2:0 NM_001355447.2:0 NM_001355448.2:0 NM_001355450.1:0 NM_001355444.3:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ZNF487
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-125
Nearest PromoterID:	NM_001355444
Entrez ID:	642819
Nearest Unigene:	Hs.719657
Nearest Refseq:	NM_001355444
Nearest Ensembl:	ENSG00000243660
Gene Name:	ZNF487
Gene Alias:	KRBO1\|ZNF487P
Gene Type:	protein-coding
CpG%:	0.116788
GC%:	0.738182
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}TSS_database{{!}}C1CAGE{{!}}NETCAGE
 |nearest_ensembl=ENSG00000243660
 |nearest_promoter_id=NM_001355444
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}PRJDB5282{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=43436849
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=NM_001355449.2 NM_001355447.2 NM_001355448.2 NM_001355450.1 NM_001355444.3
+|tss_cluster_detected=5
 |tss_id=rfhg_124942.1
 |tss_id_v3=hg_104760.1;hg_104759.1