TSS: Rfhg 125178.1: Difference between revisions

Revision as of 22:16, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_125178.1
Species:	human
Chr:	chr10

Start:	47384272
End:	47384331
Strand:	-

Source datasets

PRJNA548673

Protocol

CAGE|ReCappable-seq

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2340573,EH38E1465935)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000585316.3:0 BC051323:0 AK056666:0
GeneID:	118738
HGNC/MGI_ID:	HGNC:23535
UniProt_ID:	Q96MN9
Nearer transcript ids and distances:

Gene_name:	ZNF488
Gene_symbol:	ZNF488
Gene_synonyms:	FLJ32104
Gene_source:	HGNC:23535

TATA-Box annotation

Distance to TSS:	-8
Nearest PromoterID:	NM_001346933
Entrez ID:	118738
Nearest Unigene:	Hs.27788
Nearest Refseq:	NM_153034
Nearest Ensembl:	ENSG00000265763
Gene Name:	ZNF488
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.101695
GC%:	0.733333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:23535
+|methods=CAGE{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000265763
 |nearest_promoter_id=NM_001346933
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA548673
 |species=human
 |start=47384272
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000585316.3 BC051323 AK056666
-|tss_cluster_detected=4
+|tss_cluster_detected=2
 |tss_id=rfhg_125178.1
 |tss_score=1
 |uniprot_id=Q96MN9
 }}