TSS: Rfhg 127834.1: Difference between revisions

Revision as of 23:03, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_127834.1
TSS ID(Version3):	hg_110413.1
Species:	human
Chr:	chr10

Start:	86521738
End:	86521829
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

11

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2370723,EH38E1485264)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000298767.10:0 BC150269:0 D87450:0 AB065003:0 AF479418:0 AK290138:0 AB426838:0 AB426821:0 AB426822:0 AB426823:0 AB426824:0 AB426825:0 AB426826:0 AB426827:0 AB426828:0 AB426829:0 AB426830:0 AB426831:0 AB426832:0 AB426833:0 AB426834:0 AB426835:0 AB426837:0 AB426836:0
GeneID:	23063
HGNC/MGI_ID:	HGNC:23293
UniProt_ID:	A8K273 B3Y1W5 B3Y1W8 B3Y1W9 B3Y1X2 B3Y1X4 B3Y1X5 B3Y1X6 B3Y1X7 B3Y1X8 Q7Z5K2
Nearer transcript ids and distances:

Gene_name:	WAPL
Gene_symbol:	WAPL
Gene_synonyms:	FOE
Gene_source:	HGNC:23293

TATA-Box annotation

Distance to TSS:	1
Nearest PromoterID:	NM_001318328
Entrez ID:	23063
Nearest Unigene:	Hs.203099
Nearest Refseq:	NM_015045
Nearest Ensembl:	ENSG00000062650
Gene Name:	WAPL
Gene Alias:	FOE\|KIAA0261\|WAPAL
Gene Type:	protein-coding
CpG%:	0.120879
GC%:	0.739130
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:23293
+|methods=CAGE{{!}}TSS_database{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}RAMPAGE{{!}}NETCAGE
 |nearest_ensembl=ENSG00000062650
 |nearest_promoter_id=NM_001318328
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=86521738