TSS: Rfhg 128442.1: Difference between revisions

Revision as of 23:15, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_128442.1
Species:	human
Chr:	chr10

Start:	92831101
End:	92831114
Strand:	+

Source datasets

PRJNA401781

Protocol

CAGE|RAMPAGE|oligo_capping

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2376028,EH38E1489047)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001319194.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	EXOC6
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1
Nearest PromoterID:	NM_001319194
Entrez ID:	54536
Nearest Unigene:	Hs.655657
Nearest Refseq:	NM_019053
Nearest Ensembl:	ENSG00000138190
Gene Name:	EXOC6
Gene Alias:	EXOC6A\|SEC15\|SEC15L\|SEC15L1\|SEC15L3\|Sec15p
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}RAMPAGE{{!}}oligo_capping
 |nearest_ensembl=ENSG00000138190
 |nearest_promoter_id=NM_001319194
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA401781
 |species=human
 |start=92831101
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=NM_001319194.2
-|tss_cluster_detected=4
+|tss_cluster_detected=3
 |tss_id=rfhg_128442.1
 |tss_score=1
 |uniprot_id=
 }}