TSS: Rfhg 128541.1: Difference between revisions

Revision as of 23:16, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_128541.1
Species:	human
Chr:	chr10

Start:	93612533
End:	93612542
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2376726,EH38E1489576)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000371447.4:0
GeneID:	5146
HGNC/MGI_ID:	HGNC:8787
UniProt_ID:	P51160
Nearer transcript ids and distances:

Gene_name:	PDE6C
Gene_symbol:	PDE6C
Gene_synonyms:	ACHM5 COD4 PDEA2
Gene_source:	HGNC:8787

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NM_006204
Entrez ID:	5146
Nearest Unigene:	Hs.658121
Nearest Refseq:	NM_006204
Nearest Ensembl:	ENSG00000095464
Gene Name:	PDE6C
Gene Alias:	ACHM5\|COD4\|PDEA2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:8787
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000095464
 |nearest_promoter_id=NM_006204
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=93612533