TSS: Rfhg 130793.1: Difference between revisions

Revision as of 23:58, 6 December 2023

Basic information about the TSS

TSS ID:	rfhg_130793.1
Species:	human
Chr:	chr10

Start:	118595638
End:	118595653
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000239032.4:0 AK290461:0 AK313269:0
GeneID:	2834
HGNC/MGI_ID:	HGNC:4464
UniProt_ID:	B2R881 P49683
Nearer transcript ids and distances:

Gene_name:	PRLHR
Gene_symbol:	PRLHR
Gene_synonyms:	PrRPR
Gene_source:	HGNC:4464

TATA-Box annotation

Distance to TSS:	3
Nearest PromoterID:	NM_004248
Entrez ID:	2834
Nearest Unigene:	Hs.248119
Nearest Refseq:	NM_004248
Nearest Ensembl:	ENSG00000119973
Gene Name:	PRLHR
Gene Alias:	GPR10\|GR3\|PrRPR
Gene Type:	protein-coding
CpG%:	0.066667
GC%:	0.437500
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:4464
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000119973
 |nearest_promoter_id=NM_004248
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=118595638