TSS: Rfhg 131089.1: Difference between revisions

Revision as of 00:04, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_131089.1
Species:	human
Chr:	chr10

Start:	122163597
End:	122163645
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2401017,EH38E1506184)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_206860.3:0 NM_006997.4:0 NM_001291878.2:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TACC2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-9
Nearest PromoterID:	NM_001291878
Entrez ID:	10579
Nearest Unigene:	Hs.501252
Nearest Refseq:	NM_006997
Nearest Ensembl:	ENSG00000138162
Gene Name:	TACC2
Gene Alias:	AZU-1\|ECTACC
Gene Type:	protein-coding
CpG%:	0.083333
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE{{!}}TSS_database
 |nearest_ensembl=ENSG00000138162
 |nearest_promoter_id=NM_001291878
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD
 |species=human
 |start=122163597