TSS: Rfhg 131377.1: Difference between revisions

Revision as of 00:09, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_131377.1
Species:	human
Chr:	chr10

Start:	124942884
End:	124943107
Strand:	+

Source datasets

PRJDB5282

Protocol

C1CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2403870,EH38E1508110)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AL832925:0
GeneID:	54764
HGNC/MGI_ID:	HGNC:18224
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	ZRANB1
Gene_symbol:	ZRANB1
Gene_synonyms:	TRABID
Gene_source:	HGNC:18224

TATA-Box annotation

Distance to TSS:	872
Nearest PromoterID:	NM_017580
Entrez ID:	54764
Nearest Unigene:	Hs.595158
Nearest Refseq:	NM_017580
Nearest Ensembl:	ENSG00000019995
Gene Name:	ZRANB1
Gene Alias:	TRABID
Gene Type:	protein-coding
CpG%:	0.004484
GC%:	0.410714
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:18224
+|methods=C1CAGE
 |nearest_ensembl=ENSG00000019995
 |nearest_promoter_id=NM_017580
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJDB5282
 |species=human
 |start=124942884