TSS: Rfhg 132159.1: Difference between revisions

Revision as of 00:23, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_132159.1
Species:	human
Chr:	chr11

Start:	537495
End:	537537
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2412801,EH38E1513633)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000270115.8:0 BC035937:0 BC035936:0
GeneID:	115399
HGNC/MGI_ID:	HGNC:25430
UniProt_ID:	Q8IYG6
Nearer transcript ids and distances:

Gene_name:	LRRC56
Gene_symbol:	LRRC56
Gene_synonyms:	DKFZp761L1518 DNAAF12 FLJ00101
Gene_source:	HGNC:25430

TATA-Box annotation

Distance to TSS:	-11
Nearest PromoterID:	NM_198075
Entrez ID:	115399
Nearest Unigene:	Hs.567655
Nearest Refseq:	NM_198075
Nearest Ensembl:	ENSG00000161328
Gene Name:	LRRC56
Gene Alias:	CILD39
Gene Type:	protein-coding
CpG%:	0.119048
GC%:	0.697674
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:25430
+|methods=NETCAGE{{!}}CAGE
 |nearest_ensembl=ENSG00000161328
 |nearest_promoter_id=NM_198075
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA4843412{{!}}DRA013844
 |species=human
 |start=537495
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000270115.8 BC035937 BC035936
-|tss_cluster_detected=4
+|tss_cluster_detected=2
 |tss_id=rfhg_132159.1
 |tss_score=1
 |uniprot_id=Q8IYG6
 }}