TSS: Rfhg 132251.1: Difference between revisions

Revision as of 00:25, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_132251.1
Species:	human
Chr:	chr11

Start:	763499
End:	763503
Strand:	+

Source datasets

PRJNA401781

Protocol

oligo_capping

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000530666.1:479
GeneID:	6888
HGNC/MGI_ID:	HGNC:11559
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	GATD1
Gene_symbol:	TALDO1
Gene_synonyms:
Gene_source:	HGNC:11559

TATA-Box annotation

Distance to TSS:	13986
Nearest PromoterID:	NM_001318822
Entrez ID:	347862
Nearest Unigene:	Hs.218362
Nearest Refseq:	NM_182612
Nearest Ensembl:	ENSG00000177225
Gene Name:	GATD1
Gene Alias:	PDDC1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:11559
+|methods=oligo_capping
 |nearest_ensembl=ENSG00000177225
 |nearest_promoter_id=NM_001318822
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA401781
 |species=human
 |start=763499