TSS: Rfhg 133028.1: Difference between revisions

Revision as of 00:41, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_133028.1
Species:	human
Chr:	chr11

Start:	2130718
End:	2130728
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	MN309221:-377
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MIR483
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	3486
Nearest PromoterID:	NR_030158
Entrez ID:	619552
Nearest Unigene:
Nearest Refseq:	NR_030158
Nearest Ensembl:	ENSG00000207805
Gene Name:	MIR483
Gene Alias:	MIRN483\|hsa-mir-483\|mir-483
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.363636
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000207805
 |nearest_promoter_id=NR_030158
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=2130718