TSS: Rfhg 136752.1: Difference between revisions

Revision as of 01:52, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_136752.1
TSS ID(Version3):	hg_114228.1 hg_233013.1
Species:	human
Chr:	chr11

Start:	47579010
End:	47579090
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

15

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2450440,EH38E1538351)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000529276.1:0 ENST00000528192.5:0 ENST00000530295.5:0 ENST00000534208.5:0 ENST00000534716.2:0 ENST00000263774.9:0 ENST00000533105.1:0 BC000617:0 AK313802:0 AK223255:0 AF067139:0 AF100743:0 AK294167:0
GeneID:	4722
HGNC/MGI_ID:	HGNC:7710
UniProt_ID:	E9PJE7 E9PKL8 E9PS48 G3V194 O75489 Q53FM7
Nearer transcript ids and distances:

Gene_name:	NDUFS3
Gene_symbol:	NDUFS3
Gene_synonyms:	CI-30
Gene_source:	HGNC:7710

TATA-Box annotation

Distance to TSS:	-24
Nearest PromoterID:	NM_004551
Entrez ID:	4722
Nearest Unigene:	Hs.502528
Nearest Refseq:	NM_004551
Nearest Ensembl:	ENSG00000213619
Gene Name:	NDUFS3
Gene Alias:	CI-30\|MC1DN8
Gene Type:	protein-coding
CpG%:	0.075000
GC%:	0.592593
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:7710
+|methods=CAGE{{!}}TSS-seq{{!}}RAMPAGE{{!}}ReCappable-seq{{!}}oligo_capping{{!}}NETCAGE{{!}}SLIC_CAGE{{!}}STRIPE-seq{{!}}TIF-seq2
 |nearest_ensembl=ENSG00000213619
 |nearest_promoter_id=NM_004551
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}DBTSS{{!}}DRA000914{{!}}ENCODE{{!}}RAMPAGE{{!}}PRJNA548673{{!}}PRJNA401781{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA615891{{!}}PRJNA597322
 |species=human
 |start=47579010
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000529276.1 ENST00000528192.5 ENST00000530295.5 ENST00000534208.5 ENST00000534716.2 ENST00000263774.9 ENST00000533105.1 BC000617 AK313802 AK223255 AF067139 AF100743 AK294167
+|tss_cluster_detected=15
 |tss_id=rfhg_136752.1
 |tss_id_v3=hg_114228.1;hg_233013.1