TSS: Rfhg 136851.1: Difference between revisions

Revision as of 01:54, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_136851.1
Species:	human
Chr:	chr11

Start:	56642563
End:	56642563
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	BC136989:92 BC136990:92
GeneID:	338675
HGNC/MGI_ID:	HGNC:15258
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	OR5AP2
Gene_symbol:	OR5AP2
Gene_synonyms:
Gene_source:	HGNC:15258

TATA-Box annotation

Distance to TSS:	-124
Nearest PromoterID:	NM_001002925
Entrez ID:	338675
Nearest Unigene:	Hs.449692
Nearest Refseq:	NM_001002925
Nearest Ensembl:	ENSG00000172464
Gene Name:	OR5AP2
Gene Alias:	OR9J1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:15258
+|methods=TSS_database
 |nearest_ensembl=ENSG00000172464
 |nearest_promoter_id=NM_001002925
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=EPD
 |species=human
 |start=56642563