TSS: Rfhg 136912.1: Difference between revisions

Revision as of 01:55, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_136912.1
Species:	human
Chr:	chr11

Start:	57387363
End:	57387374
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	MN309248:-2
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PRG2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	3282
Nearest PromoterID:	NM_001302927
Entrez ID:	5553
Nearest Unigene:	Hs.512633
Nearest Refseq:	NM_002728
Nearest Ensembl:	ENSG00000186652
Gene Name:	PRG2
Gene Alias:	BMPG\|MBP\|MBP1\|proMBP
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.250000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000186652
 |nearest_promoter_id=NM_001302927
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=57387363