TSS: Rfhg 139676.1: Difference between revisions

Revision as of 02:49, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_139676.1
TSS ID(Version3):	hg_115259.1
Species:	human
Chr:	chr11

Start:	65961679
End:	65961764
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

12

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2460422,EH38E1545762)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000532333.5:0 ENST00000529532.5:0 ENST00000528573.1:0 ENST00000530251.1:0 ENST00000312397.10:0 AK309104:0 AK297589:0 AK223016:0 AK293200:0 AK298184:0 BC001058:0 AB006198:0 AF353625:0
GeneID:	9092
HGNC/MGI_ID:	HGNC:10538
UniProt_ID:	B4DDH9 B4DMR4 B4DP43 E9PQI8 O43290
Nearer transcript ids and distances:

Gene_name:	SART1
Gene_symbol:	SART1
Gene_synonyms:	Ara1 HAF SNRNP110 Snu66
Gene_source:	HGNC:10538

TATA-Box annotation

Distance to TSS:	-13
Nearest PromoterID:	NM_005146
Entrez ID:	9092
Nearest Unigene:	Hs.502883
Nearest Refseq:	NM_005146
Nearest Ensembl:	ENSG00000175467
Gene Name:	SART1
Gene Alias:	Ara1\|HAF\|HOMS1\|SART1259\|SNRNP110\|Snu66
Gene Type:	protein-coding
CpG%:	0.129412
GC%:	0.651163
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:10538
+|methods=CAGE{{!}}TSS_database{{!}}TSS-seq{{!}}NETCAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}oligo_capping{{!}}STRIPE-seq
 |nearest_ensembl=ENSG00000175467
 |nearest_promoter_id=NM_005146
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DBTSS{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA597322
 |species=human
 |start=65961679
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000532333.5 ENST00000529532.5 ENST00000528573.1 ENST00000530251.1 ENST00000312397.10 AK309104 AK297589 AK223016 AK293200 AK298184 BC001058 AB006198 AF353625
+|tss_cluster_detected=12
 |tss_id=rfhg_139676.1
 |tss_id_v3=hg_115259.1