TSS: Rfhg 142214.1: Difference between revisions

Revision as of 03:37, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_142214.1
Species:	human
Chr:	chr11

Start:	94740306
End:	94740351
Strand:	-

Source datasets

PRJNA548673

Protocol

ReCappable-seq

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2484803,EH38E1562093)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000537874.1:-4
GeneID:	105369438
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LOC105369438
Gene_symbol:	PIWIL4-AS1
Gene_synonyms:
Gene_source:	EntrezGene:105369438

TATA-Box annotation

Distance to TSS:	27
Nearest PromoterID:	NR_135093
Entrez ID:	105369438
Nearest Unigene:	Hs.568921
Nearest Refseq:	NR_135093
Nearest Ensembl:	ENSG00000255929
Gene Name:	LOC105369438
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.044444
GC%:	0.456522
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=ReCappable-seq
 |nearest_ensembl=ENSG00000255929
 |nearest_promoter_id=NR_135093
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA548673
 |species=human
 |start=94740306
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000537874.1
-|tss_cluster_detected=2
+|tss_cluster_detected=1
 |tss_id=rfhg_142214.1
 |tss_score=1
 |uniprot_id=
 }}