TSS: Hg 102804.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=2387 |entrez_id=23413 |gc_percent=0.527363 |gene_alias=FLUP|FREQ |gene_description=neuronal calcium sensor 1 |gene_name=NCS1 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
|FREQ= | |||
|chr=chr9 | |||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
|distance= | |||
|distance_to_tss=2387 | |distance_to_tss=2387 | ||
|end=130174968 | |||
|entrez_id=23413 | |entrez_id=23413 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_014286 | |nearest_refseq=NM_014286 | ||
|nearest_unigene=Hs.642946 | |nearest_unigene=Hs.642946 | ||
|num_trans=0 | |||
|species=human | |||
|start=130174961 | |||
|strand=- | |||
|tata_box="-36(GGCCTTTAAAAA,-,0.00),-35(GCCTTTAAAAAT,-,0.00)" | |tata_box="-36(GGCCTTTAAAAA,-,0.00),-35(GCCTTTAAAAAT,-,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102804.1 | |tss_id=hg_102804.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:42, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2387 |
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| Nearest PromoterID: | NM_014286 |
| Entrez ID: | 23413 |
| Nearest Unigene: | Hs.642946 |
| Nearest Refseq: | NM_014286 |
| Nearest Ensembl: | ENSG00000107130 |
| Gene Name: | NCS1 |
| Gene Alias: | FLUP |
| Gene Description: | neuronal calcium sensor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-36(GGCCTTTAAAAA,-,0.00),-35(GCCTTTAAAAAT,-,0.00)" |