TSS: Hg 102826.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=539 |entrez_id=286336 |gc_percent=0.616915 |gene_alias=C9orf59 |gene_description=family with sequence similarity 78 member A |ge...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=KJ904173:-131 CU690620:-132 BC152842:-190 BC156765:-190 AB528860:-190 | |||
|chr=chr9 | |||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=-131 | |||
|distance_to_tss=539 | |distance_to_tss=539 | ||
|end=131275989 | |||
|entrez_id=286336 | |entrez_id=286336 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_033387 | |nearest_refseq=NM_033387 | ||
|nearest_unigene=Hs.143878 | |nearest_unigene=Hs.143878 | ||
|num_trans=5 | |||
|species=human | |||
|start=131275971 | |||
|strand=- | |||
|transcript_name=KJ904173 | |||
|tss_classification=yes | |||
|tss_id=hg_102826.1 | |tss_id=hg_102826.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:43, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 539 |
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| Nearest PromoterID: | NM_033387 |
| Entrez ID: | 286336 |
| Nearest Unigene: | Hs.143878 |
| Nearest Refseq: | NM_033387 |
| Nearest Ensembl: | ENSG00000126882 |
| Gene Name: | FAM78A |
| Gene Alias: | C9orf59 |
| Gene Description: | family with sequence similarity 78 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |