TSS: Rfhg 148912.1: Difference between revisions

Revision as of 05:46, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_148912.1
TSS ID(Version3):	hg_124838.1 hg_124839.1
Species:	human
Chr:	chr12

Start:	27332853
End:	27332935
Strand:	+

Source datasets

FANTOM5|PRJNA4843412|DRA013844

Protocol

CAGE|NETCAGE

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2542068,EH38E1601002)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000544915.5:0 ENST00000395901.6:0 ENST00000546179.5:0 AF256215:0 AK296706:0
GeneID:	56938
HGNC/MGI_ID:	HGNC:18984
UniProt_ID:	Q8WYA1
Nearer transcript ids and distances:

Gene_name:	ARNTL2
Gene_symbol:	BMAL2
Gene_synonyms:	CLIF MOP9 PASD9 bHLHe6
Gene_source:	HGNC:18984

TATA-Box annotation

Distance to TSS:	58
Nearest PromoterID:	NM_020183
Entrez ID:	56938
Nearest Unigene:	Hs.445447
Nearest Refseq:	NM_020183
Nearest Ensembl:	ENSG00000029153
Gene Name:	ARNTL2
Gene Alias:	BMAL2\|CLIF\|MOP9\|PASD9\|bHLHe6
Gene Type:	protein-coding
CpG%:	0.146341
GC%:	0.783133
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:18984
+|methods=CAGE{{!}}NETCAGE
 |nearest_ensembl=ENSG00000029153
 |nearest_promoter_id=NM_020183
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}DRA013844
 |species=human
 |start=27332853
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000544915.5 ENST00000395901.6 ENST00000546179.5 AF256215 AK296706
+|tss_cluster_detected=3
 |tss_id=rfhg_148912.1
 |tss_id_v3=hg_124838.1;hg_124839.1