TSS: Rfhg 152026.1: Difference between revisions

Revision as of 06:46, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_152026.1
TSS ID(Version3):	hg_126113.1 hg_126114.1
Species:	human
Chr:	chr12

Start:	56468537
End:	56468588
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

13

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2563754,EH38E1615757)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000338146.7:0 AK300594:0 AF451989:0 AL832247:0 BC020844:0 AK291920:0 BX647957:0
GeneID:	283377
HGNC/MGI_ID:	HGNC:27468
UniProt_ID:	B4DUC9 Q8WW59
Nearer transcript ids and distances:

Gene_name:	SPRYD4
Gene_symbol:	SPRYD4
Gene_synonyms:	DKFZp686N0877
Gene_source:	HGNC:27468

TATA-Box annotation

Distance to TSS:	-16
Nearest PromoterID:	NM_207344
Entrez ID:	283377
Nearest Unigene:	Hs.128676
Nearest Refseq:	NM_207344
Nearest Ensembl:	ENSG00000176422
Gene Name:	SPRYD4
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.078431
GC%:	0.653846
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:27468
+|methods=CAGE{{!}}TSS_database{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}NETCAGE{{!}}C1CAGE{{!}}TIF-seq2
 |nearest_ensembl=ENSG00000176422
 |nearest_promoter_id=NM_207344
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}ENCODE{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282
 |species=human
 |start=56468537
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000338146.7 AK300594 AF451989 AL832247 BC020844 AK291920 BX647957
+|tss_cluster_detected=13
 |tss_id=rfhg_152026.1
 |tss_id_v3=hg_126113.1;hg_126114.1