TSS: Rfhg 152095.1: Difference between revisions

Revision as of 06:47, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_152095.1
Species:	human
Chr:	chr12

Start:	56645095
End:	56645100
Strand:	-

Source datasets

PRJNA548673

Protocol

CAGE|ReCappable-seq

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2563915,EH38E1615894)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000384304.1:-1 X96659:-1
GeneID:	26789
HGNC/MGI_ID:	HGNC:10210
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	SNORD59A
Gene_symbol:	SNORD59A
Gene_synonyms:	U59
Gene_source:	HGNC:10210

TATA-Box annotation

Distance to TSS:	4
Nearest PromoterID:	NR_002737
Entrez ID:	26789
Nearest Unigene:
Nearest Refseq:	NR_002737
Nearest Ensembl:	ENSG00000207031
Gene Name:	SNORD59A
Gene Alias:	RNU59\|U59
Gene Type:	snoRNA
CpG%:	0.000000
GC%:	0.333333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=snoRNA
 |hgnc_mgi_id=HGNC:10210
+|methods=CAGE{{!}}ReCappable-seq
 |nearest_ensembl=ENSG00000207031
 |nearest_promoter_id=NR_002737
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=PRJNA548673
 |species=human
 |start=56645095
@@ Line 32: / Line 34: @@
 |tata_box=
 |transcript_name=ENST00000384304.1 X96659
-|tss_cluster_detected=3
+|tss_cluster_detected=2
 |tss_id=rfhg_152095.1
 |tss_score=1
 |uniprot_id=
 }}