TSS: Hg 102874.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=3365 |entrez_id=2889 |gc_percent=0.457711 |gene_alias=C3G|GRF2 |gene_description=Rap guanine nucleotide exchange factor 1 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
|GRF2= | |||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance= | |||
|distance_to_tss=3365 | |distance_to_tss=3365 | ||
|end=131734180 | |||
|entrez_id=2889 | |entrez_id=2889 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_005312 | |nearest_refseq=NM_005312 | ||
|nearest_unigene=Hs.127897 | |nearest_unigene=Hs.127897 | ||
|num_trans=0 | |||
|species=human | |||
|start=131734166 | |||
|strand=- | |||
|tata_box="-34(GCCTTTATAGAG,+,0.00),-34(GCCTTTATAGAG,-,0.00),-32(CTTTATAGAGCA,+,0.00)" | |tata_box="-34(GCCTTTATAGAG,+,0.00),-34(GCCTTTATAGAG,-,0.00),-32(CTTTATAGAGCA,+,0.00)" | ||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_102874.1 | |tss_id=hg_102874.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 19:45, 8 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 3365 |
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| Nearest PromoterID: | NM_005312 |
| Entrez ID: | 2889 |
| Nearest Unigene: | Hs.127897 |
| Nearest Refseq: | NM_005312 |
| Nearest Ensembl: | ENSG00000107263 |
| Gene Name: | RAPGEF1 |
| Gene Alias: | C3G |
| Gene Description: | Rap guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(GCCTTTATAGAG,+,0.00),-34(GCCTTTATAGAG,-,0.00),-32(CTTTATAGAGCA,+,0.00)" |