TSS: Rfhg 154030.1: Difference between revisions

Revision as of 07:24, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_154030.1
Species:	human
Chr:	chr12

Start:	79455466
End:	79455472
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2581550,EH38E1627314)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000550268.2:6
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	MIR1252
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	36212
Nearest PromoterID:	NR_031700
Entrez ID:	100302136
Nearest Unigene:
Nearest Refseq:	NR_031700
Nearest Ensembl:	ENSG00000221788
Gene Name:	MIR1252
Gene Alias:	MIRN1252\|hsa-mir-1252
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000221788
 |nearest_promoter_id=NR_031700
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=79455466