TSS: Rfhg 154332.1: Difference between revisions

Revision as of 07:30, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_154332.1
TSS ID(Version3):	hg_132405.1
Species:	human
Chr:	chr12

Start:	88142066
End:	88142203
Strand:	-

Source datasets

Protocol

TSS cluster detected^*

14

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2586942,EH38E1630094)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000552810.6:0 ENST00000674971.1:0 ENST00000672414.2:0 ENST00000673058.2:0 ENST00000675833.1:0 ENST00000675476.1:0 ENST00000309041.12:0 ENST00000675794.1:0 ENST00000676074.1:0 ENST00000675408.1:0 ENST00000675230.1:0 ENST00000675628.1:0 ENST00000676448.1:0 ENST00000547926.7:0 ENST00000671822.2:0 ENST00000676351.1:0 ENST00000397838.8:0 ENST00000675559.1:0 ENST00000676418.1:0 ENST00000676331.1:0 ENST00000552770.3:0
GeneID:	80184
HGNC/MGI_ID:	HGNC:29021
UniProt_ID:	A0A0A0MS86 A0A5F9ZHU6 A0A5F9ZHV7 A0A6Q8PFZ5 A0A6Q8PG44 A0A6Q8PGA1 A0A6Q8PGB1 A0A6Q8PGC3 A0A6Q8PGP6 A0A6Q8PGQ4 A0A6Q8PH24 A0A6Q8PH78 F8VS29 F8W097 J3KNF5 O15078
Nearer transcript ids and distances:

Gene_name:	CEP290
Gene_symbol:	CEP290
Gene_synonyms:	3H11Ag BBS14 CT87 FLJ13615 JBTS5 KIAA0373 LCA10 MKS4 NPHP6 POC3 SLSN6 rd16
Gene_source:	HGNC:29021

TATA-Box annotation

Distance to TSS:	82
Nearest PromoterID:	NM_025114
Entrez ID:	80184
Nearest Unigene:	Hs.150444
Nearest Refseq:	NM_025114
Nearest Ensembl:	ENSG00000198707
Gene Name:	CEP290
Gene Alias:	3H11Ag\|BBS14\|CT87\|JBTS5\|LCA10\|MKS4\|NPHP6\|POC3\|SLSN6\|rd16
Gene Type:	protein-coding
CpG%:	0.065693
GC%:	0.565217
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 21: / Line 21: @@
 |gene_type=protein-coding
 |hgnc_mgi_id=HGNC:29021
+|methods=CAGE{{!}}TSS_database{{!}}RAMPAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}NETCAGE{{!}}TIF-seq2{{!}}STRIPE-seq{{!}}C1CAGE
 |nearest_ensembl=ENSG00000198707
 |nearest_promoter_id=NM_025114
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA597322{{!}}PRJDB5282
 |species=human
 |start=88142066