TSS: Rfhg 155141.1: Difference between revisions

Revision as of 07:43, 7 December 2023

Basic information about the TSS

TSS ID:	rfhg_155141.1
Species:	human
Chr:	chr12

Start:	97258331
End:	97258337
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	CTCF-only,CTCF-bound (EH38D2595255,EH38E1636034)
Category:	CTCF-only

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	RMST
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-204442
Nearest PromoterID:	NR_152618
Entrez ID:	196475
Nearest Unigene:	Hs.652568
Nearest Refseq:	NR_024037
Nearest Ensembl:	ENSG00000255794
Gene Name:	RMST
Gene Alias:	LINC00054\|NCRMS\|NCRNA00054
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 21: / Line 21: @@
 |gene_type=ncRNA
 |hgnc_mgi_id=
+|methods=CAGE
 |nearest_ensembl=ENSG00000255794
 |nearest_promoter_id=NR_152618
@@ Line 27: / Line 28: @@
 |peak_score=1
 |reftss_version=4
+|source_datasets=FANTOM5
 |species=human
 |start=97258331