TSS: Rfhg 155240.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 21: | Line 21: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26430 | |hgnc_mgi_id=HGNC:26430 | ||
|methods=CAGE{{!}}NETCAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2 | |||
|nearest_ensembl=ENSG00000166130 | |nearest_ensembl=ENSG00000166130 | ||
|nearest_promoter_id=NM_201612 | |nearest_promoter_id=NM_201612 | ||
| Line 27: | Line 28: | ||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA000914{{!}}ENCODE{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA548673{{!}}PRJNA401781{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start=98644714 | |start=98644714 | ||
| Line 32: | Line 34: | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000299157.5 BC051372 AJ539426 AJ539427 BC107572 BC029415 AJ539425 BC058933 AK055613 | |transcript_name=ENST00000299157.5 BC051372 AJ539426 AJ539427 BC107572 BC029415 AJ539425 BC058933 AK055613 | ||
|tss_cluster_detected=10 | |||
|tss_id=rfhg_155240.1 | |tss_id=rfhg_155240.1 | ||
|tss_id_v3=hg_132837.1 | |tss_id_v3=hg_132837.1 | ||
Revision as of 07:45, 7 December 2023
Basic information about the TSS
|
| |||||||||||||||
| Source datasets | FANTOM5|DRA000914|ENCODE|PRJNA4843412|DRA013844|PRJNA548673 |PRJNA401781|PRJNA615891 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|NETCAGE|ReCappable-seq|SLIC_CAGE|TIF-seq2 | |||||||||||||||
| TSS cluster detected* | 10 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2596279,EH38E1636660) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_201612 |
| Entrez ID: | 121457 |
| Nearest Unigene: | Hs.252543 |
| Nearest Refseq: | NM_153687 |
| Nearest Ensembl: | ENSG00000166130 |
| Gene Name: | IKBIP |
| Gene Alias: | IKIP |
| Gene Type: | protein-coding |
| CpG%: | 0.082474 |
| GC%: | 0.693878 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.